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Paketbeschreibung


Paketnamelast-align
Beschreibunggenome-scale comparison of biological sequences
Archiv/RepositoryOffizielles Ubuntu Archiv lucid (universe)
Version87-1
Sektionuniverse/science
Prioritätoptional
Installierte Größe628 Byte
Hängt ab vonlibc6 (>= 2.4), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.4.0)
Empfohlene Paketepython, python-imaging
PaketbetreuerUbuntu Developers
Quelle
Paketgröße250290 Byte
Prüfsumme MD5e3074c1bb6ad68524f96a5df709f4c9a
Prüfsumme SHA1608c0ee57b629e5b86d0774550cc76655743eaaf
Prüfsumme SHA2566a63fe3f28062b1cf662bbf610cd1634c27c4d1fc45d081d84644ac88380ba1f
Link zum Herunterladenlast-align_87-1_i386.deb
Ausführliche BeschreibungLAST is software for comparing and aligning sequences, typically DNA or protein sequences. LAST is similar to BLAST, but it copes better with very large amounts of sequence data. Here are two things LAST is good at: . * Comparing large (e.g. mammalian) genomes. * Mapping lots of sequence tags onto a genome. . The main technical innovation is that LAST finds initial matches based on their multiplicity, instead of using a fixed size (e.g. BLAST uses 11-mers). This allows to map tags to genomes without repeat-masking, without becoming overwhelmed by repetitive hits. To find these variable-sized matches, it uses a suffix array (inspired by Vmatch). To achieve high sensitivity, it uses a discontiguous suffix array, analogous to spaced seeds.


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