DEBFIND Suche nach Debian-Paketen

Suchplatform für Softwarepakete und Archive Debian-basierter Linux-Distributionen

beta ! Diese website wird noch weiterentwickelt.

Liste aller Kategorien/Sektionen | Suchmaske | Haftungsausschluß

Paketbeschreibung


Paketnamesim4
Beschreibungtool for aligning cDNA and genomic DNA
Archiv/RepositoryOffizielles Debian Archiv squeeze (main)
Version0.0.20030921-3
Sektionscience
Prioritätoptional
Installierte Größe132 Byte
Hängt ab vonlibc6 (>= 2.7-1)
Empfohlene Pakete
PaketbetreuerDebian-Med Packaging Team
Quelle
Paketgröße49936 Byte
Prüfsumme MD57c0b74c00d8e27e3fab6df73ff565cfd
Prüfsumme SHA1d2d201fb2d6a9756c41e9fd4db30e74d2ca7a1a6
Prüfsumme SHA2564a38d9c699d824e4bbac7fa29f0be0c29c01b3936d5825bbb0aef6f9621eae0a
Link zum Herunterladensim4_0.0.20030921-3_i386.deb
Ausführliche Beschreibungsim4 is a similarity-based tool for aligning an expressed DNA sequence (EST, cDNA, mRNA) with a genomic sequence for the gene. It also detects end matches when the two input sequences overlap at one end (i.e., the start of one sequence overlaps the end of the other). . sim4 employs a blast-based technique to first determine the basic matching blocks representing the "exon cores". In this first stage, it detects all possible exact matches of W-mers (i.e., DNA words of size W) between the two sequences and extends them to maximal scoring gap-free segments. In the second stage, the exon cores are extended into the adjacent as-yet-unmatched fragments using greedy alignment algorithms, and heuristics are used to favor configurations that conform to the splice-site recognition signals (GT-AG, CT-AC). If necessary, the process is repeated with less stringent parameters on the unmatched fragments.


Impressum
Linux is a registered trademark of Linus Torvalds