| Paketname | last-align |
| Beschreibung | genome-scale comparison of biological sequences |
| Archiv/Repository | Offizielles Debian Archiv squeeze (main) |
| Version | 128-1 |
| Sektion | science |
| Priorität | optional |
| Installierte Größe | 640 Byte |
| Hängt ab von | libc6 (>= 2.1.3), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.4.0) |
| Empfohlene Pakete | python, python-imaging |
| Paketbetreuer | Debian Med Packaging Team |
| Quelle | |
| Paketgröße | 269112 Byte |
| Prüfsumme MD5 | c484df46680d50f956e508f1875095ab |
| Prüfsumme SHA1 | e83c2d833fe3912f1357afb2451d9c0d0faed6ef |
| Prüfsumme SHA256 | 562d6a205658fd631a9c033dd2817c361bb3d630f0873174f4a2eedc5801cd5e |
| Link zum Herunterladen | last-align_128-1_i386.deb |
| Ausführliche Beschreibung | LAST is software for comparing and aligning sequences, typically DNA or
protein sequences. LAST is similar to BLAST, but it copes better with very
large amounts of sequence data. Here are two things LAST is good at:
.
* Comparing large (e.g. mammalian) genomes.
* Mapping lots of sequence tags onto a genome.
.
The main technical innovation is that LAST finds initial matches based on
their multiplicity, instead of using a fixed size (e.g. BLAST uses 11-mers).
This allows to map tags to genomes without repeat-masking, without becoming
overwhelmed by repetitive hits. To find these variable-sized matches, it uses
a suffix array (inspired by Vmatch). To achieve high sensitivity, it uses a
discontiguous suffix array, analogous to spaced seeds.
|